Shga Sample 750k.tar.gz [TRUSTED]

plink --bfile shga_qc --recode vcf --out shga_qc
bgzip shga_qc.vcf
tabix -p vcf shga_qc.vcf.gz

So, shga_sample_750k.tar.gz is a tar archive that has been compressed using gzip.

fam <- fread("shga_sample.fam", header=F) colnames(fam) <- c("FID", "IID", "PID", "MID", "Sex", "Pheno") print(paste("Samples:", nrow(fam))) shga sample 750k.tar.gz

"shga sample 750k.tar.gz" appears to be a filename following common Unix archive/compression conventions. Below is a detailed breakdown of what the name likely indicates, how to inspect and handle such a file, and security/usage considerations. plink --bfile shga_qc --recode vcf --out shga_qc bgzip

After extraction, inspect the contents to understand the structure and what data is included. So, shga_sample_750k

# List the contents of the extracted directory
ls -lh

(End.)